BtaEX6057622 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90746485-90749968:+
Coord C1 exon
chr12:90746485-90746591
Coord A exon
chr12:90748812-90748933
Coord C2 exon
chr12:90749803-90749968
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTTTTTTGACTGTAGGTA
3' ss Score
9.22
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCGTGGTGTCCCTGGTTGCCGTCCACCCCTCCACAGTGAACTCTCTCGGGAAGCAGCTCCTGCCAAAGACCTTTGGACAGTCCAACGTCAACATCACTCAGCAAGTG
Seq A exon
GTAATTGGTACGCCTCAGAGACCTGCAGCGCCAAACACTATCGTGGTGGGAAGCCCACACACCCCTAACACTCACTTTGTCTCCCAGAACCAGCCTTCAGACCCCTCACCTTGGTCTGCCGG
Seq C2 exon
GAAGCGCAACCGGAAAGGAGAGAAGAACGGGAAGGGGCTGCGGCACTTCTCCATGAAGGTGTGCGAGAAGGTGCAGCGCAAAGGGACCACGTCCTACAACGAGGTGGCCGACGAGCTGGTGGCTGAGTTCAGCGCAGCCGACAGCCACATCCTGCCCAGTGAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645-'7-11,'7-6,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.976 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.6=83.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTCCACAGTGAACTCTC
R:
GACTCACTGGGCAGGATGTG
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]