DreEX0078383 @ danRer10
Exon Skipping
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35146154-35153300:+
Coord C1 exon
chr9:35146154-35146257
Coord A exon
chr9:35150265-35150386
Coord C2 exon
chr9:35153135-35153300
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCTGATTGTCTCTGTCGCAGGTT
3' ss Score
8.89
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATG
Seq A exon
GTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGG
Seq C2 exon
AAAAAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTTTCCATGAAGGTTTGCGAGAAGGTCCAGCGGAAGGGTGTCACAACTTACAACGAGGTTGCTGATGAGCTTGTGGCCGAGTTCAGCTCTGGTGATAATCATATCTCTCCTAATGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293-'6-8,'6-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.976 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.0=83.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCTTTAGTAACGGTGCA
R:
TGATTATCACCAGAGCTGAACTC
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]