GgaEX1003647 @ galGal3
Exon Skipping
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141546113-141551550:-
Coord C1 exon
chr1:141551444-141551550
Coord A exon
chr1:141546936-141547057
Coord C2 exon
chr1:141546113-141546278
Length
122 bp
Sequences
Splice sites
3' ss Seq
GATTTTTATCTTTGTCGTAGGTT
3' ss Score
8.48
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAGTTGTTTCTCTATTGGCTGTTCATCCCTCTACAGTAAATACACTCGGAAAACAGCTCCTGCCAAAAACATTTGGACGGTCTAATGTCAACATTGCACAACAAGTG
Seq A exon
GTTATCGGTACACCTCAGAGACCTTCAGTGCCAAATACTATCCTGGTAGGAAGTCCACATACACCTAACACACATTTTGTATCACAAAACCAGACTGCAGATTCTTCGCCGTGGTCTGCTGG
Seq C2 exon
GAAGCGGAACAGAAAAGGAGAGAAGAGCGGCACGGGTTTACGTCATTTCTCTATGAAGGTTTGTGAGAAGGTACAAAGGAAAGGAACCACCTCATACAATGAGGTGGCAGACGAGTTGGTTGCAGAATTCACTACCCCTGACGATCACATTTCACCAAATGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'5-7,'5-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.902 C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.6=83.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTTCATCCCTCTACAGT
R:
GGTGAAATGTGATCGTCAGGGG
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]