GgaEX1003647 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136655319-136660756:-
Coord C1 exon
chr1:136660650-136660756
Coord A exon
chr1:136656142-136656263
Coord C2 exon
chr1:136655319-136655484
Length
122 bp
Sequences
Splice sites
3' ss Seq
GATTTTTATCTTTGTCGTAGGTT
3' ss Score
8.48
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAGTTGTTTCTCTATTGGCTGTTCATCCCTCTACAGTAAATACACTCGGAAAACAGCTCCTGCCAAAAACATTTGGACGGTCTAATGTCAACATTGCACAACAAGTG
Seq A exon
GTTATCGGTACACCTCAGAGACCTTCAGTGCCAAATACTATCCTGGTAGGAAGTCCACATACACCTAACACACATTTTGTATCACAAAACCAGACTGCAGATTCTTCGCCGTGGTCTGCTGG
Seq C2 exon
GAAGCGGAACAGAAAAGGAGAGAAGAGCGGCACGGGTTTACGTCATTTCTCTATGAAGGTTTGTGAGAAGGTACAAAGGAAAGGAACCACCTCATACAATGAGGTGGCAGACGAGTTGGTTGCAGAATTCACTACCCCTGACGATCACATTTCACCAAATGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823_MULTIEX1-5/5=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.890 C2=0.571
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=FE(46.7=100)
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.6=83.9)
Main Skipping Isoform:
ENSGALT00000027160fB4303
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTTCATCCCTCTACAGT
R:
GGTGAAATGTGATCGTCAGGGG
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]