RnoEX0095566 @ rn6
Exon Skipping
Gene
ENSRNOG00000012960 | Uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:RGD Symbol;Acc:1310630]
Coordinates
chr3:2583326-2584523:-
Coord C1 exon
chr3:2584161-2584523
Coord A exon
chr3:2583885-2583910
Coord C2 exon
chr3:2583326-2583501
Length
26 bp
Sequences
Splice sites
3' ss Seq
TGGGCGTGCCTCTCCTCCAGGTT
3' ss Score
9.93
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
TGCAGCTGGCCTGGTCTCGTGACATCGGTCAGAAAGTCACGAGTACGGGCTGAGCCTGCTGCTGCAGTGGCACTATGGCCTCGGAGAGGGATGTGCGCGCAAAGCTGCAGCGCGCGGGCCAGGATCACCTCCTTCGCTTCTGGGCCGACCTGGCTCCGGAGCTCCGAGCGGCGCTGCTAGCTGAGCTCTCCTCACTGGAGGCTGACGCGCTGCGTGAGCACTGCCAGCGCGCCTCAGCCGCCAGCGCGCTAGCCTCGGGTCCTCTGCCGGACCTGGCGGCGCGCCTGCAGCCCCTGCCCCCAGAACGCTTGGGTAGCGCGATCCGCTGCGACCAAGAGACACGCCTGCGGTGGGAAGAGGAAG
Seq A exon
GTTTCCGACAGATTGCTCTGAACAAG
Seq C2 exon
GTACATCATGACCAGTGAGTTTACACTAGGACCCACAATCAAGTTCTTCAAGGAGCACGACTTCTTTCACCTAGACCCCGCTAACGTGGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012960-'0-3,'0-2,1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(6.3=24.7)
A:
PF0170413=UDPGP=FE(17.8=100)
C2:
PF0170413=UDPGP=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAAGAGACACGCCTGC
R:
AGCGGGGTCTAGGTGAAAGAA
Band lengths:
116-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]