DreEX6011627 @ danRer10
Exon Skipping
Gene
ENSDARG00000013082 | uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1056]
Coordinates
chr5:31211509-31212838:+
Coord C1 exon
chr5:31211509-31212013
Coord A exon
chr5:31212121-31212325
Coord C2 exon
chr5:31212663-31212838
Length
205 bp
Sequences
Splice sites
3' ss Seq
TAAACAACTTGTATTTTCAGGGC
3' ss Score
7.85
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
AGTTGCCGAATGACTTGAGTACACACTAAATACGCTTTTACAGTAGTTTTTTTTTTCTTATTTGCCCAGTTATATGTAACTCCGGCTATGTTTATTGTACCAACAACCGCACAGTGATCACGAGTTTCAGGCTGTTGAAAACAGGACCTGGATCAGCACTAATATCAGCTCGACTCCTATCACTACTGTGTTGAGCAGCTTCTAGCAGAGAAAGATGTCCTTTGAGGAAGCTAAAGCGAAATTAGAAGCAGCAGGACAGACTCATGTTTTACAGTTCTGGGATGAACTTTCTGCGGAAGAAAGGGGCACATTTCTGGAGGAAATTTTTCAGCTGCAGCCCGACGAGTTAGTCGAGCACTGCCGAGAAGCTGCAGCGTCCGCAAGCCGACAATCGAGTGCCGATGGTCGGCTTGACGCGCGGATGCAGCCCGTTCCTCCAGAGTTCATTGGGAGTGTGCGTAAAAGTGACAGAGAAACCCTTCAGAAGTGGGAGAATGAAG
Seq A exon
GGCTACTGCAGATTTCACAGGACAGAGTGGCTGTTTTGCTGTTAGCTGGTGGTCAGGGGACTCGTCTTGGAGTATCTTATCCCAAGGGCATGTATAATGTTGGGCTTCCAAGTGGGAAAACCCTGTACCAAATTCAGGCAGAGAGGATCCAGAAAGTACAAGAGCTGGCCAATGTGAGGCATGGCAGTAGGTGCACAATACCATG
Seq C2 exon
GTTCATAATGACCAGTGAGTTCACCCTGGGACCCACAGAGAAGTTCTTCAAAGACAACAAATATTTTGGCCTTTGTCCATCCAATGTGGTCATGTTTGAACAGAGGATGATACCAGCTGTGGGCTTTGATGGAAAGATCATCCTGGAGAAGAAAAACAAAATAGCCATGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013082-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(12.5=53.1)
A:
PF0170413=UDPGP=FE(16.6=100)
C2:
PF0170413=UDPGP=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGCAGGACAGACTCA
R:
AACTTCTCTGTGGGTCCCAGG
Band lengths:
302-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]