GgaEX6014644 @ galGal4
Exon Skipping
Gene
ENSGALG00000009090 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr17:362762-371182:-
Coord C1 exon
chr17:370909-371182
Coord A exon
chr17:364484-364688
Coord C2 exon
chr17:362762-362937
Length
205 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTTCTCCTGTCCAAGGTT
3' ss Score
6.75
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
ATGGAGCCGCCCGAGGAGGTGCGGGCGCGGCTGGAGCGGGCCGGGCAGGGCCACCTCCTGCGCTTCTGGGCCGAGCTGGACCCGGCGCAGCGCGCGGAGCTGCTGGCCGCGCTGCCGCCGGGTCTGGGAGAGCACTGCCGGCTGGCGGCGGCCTGCGCCCGGCCGCGGGAGCGCCTGGAGCGCCTGGACGGCCGCGTGGAGCCGCTGCCCGCCGCGGTCCTGGGCAGCGTCCGGCACTGCGGCCCCGCCGCGCTGCAGCGCTGGGAGGACGAAG
Seq A exon
GTTTGCACCAGATCTCACAGAACAAAGTGGCAGTGCTGCTGCTGGCTGGAGGACAAGGAACCCGCCTGGGAGTGAGCTACCCCAAGGGCATGTACAATGTGGGACTGCCCAGTGGCAAAACCTTGTATCAGATCCAAGCAGAAAGGATCCGCAAAGTGGAGCAGCTCGCTGGCCAGAGGCACCACTGCAAGTGTACCATCCCCTG
Seq C2 exon
GTACATCATGACAAGTGAGTTCACGCTGGGGCCAACAGAGGAGTTCTTTGTAAAACACAGCTACTTCAACCTGGATAAAGCCAATGTAATCATGTTTGAACAGAGGATGCTGCCAGCTGTCACCTTTGATGGGAAGGCCATCTTGGAGGAGAAGGGGAAAATTGCTATGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090-'3-4,'3-0,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(10.8=34.8)
A:
PF0170413=UDPGP=FE(17.2=100)
C2:
PF0170413=UDPGP=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCTGGGAGAGCACTG
R:
GGCCTTCCCATCAAAGGTGAC
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]