BtaEX6047578 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106160391-106161862:-
Coord C1 exon
chr11:106161556-106161862
Coord A exon
chr11:106160770-106160974
Coord C2 exon
chr11:106160391-106160566
Length
205 bp
Sequences
Splice sites
3' ss Seq
ATGGTGCCCCCTGCCTCCAGGTT
3' ss Score
10.19
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
Exon sequences
Seq C1 exon
GCGGCCGGCGGCGGCAACATGGCCTCGGAGGCGGACCTGCGCGCCCGGCTGCAGCGCGCCAGCCAGGAGCACCTCCTGCGCTTCTGCGCCGAGCTGGCGCCGGAGCCCCGCGCCGCGCTGCTGGCCCAACTCGAGGCCCTGGAGCCCGAGGCGCTGCGCCAGCACTGCCAGCGCGCGGCTGCTGCCTGCGCGCGCCGCCCGGGCCCGCCGCCCGACCTGGCTGCGCGCCTGCAGCCCCTGCCTCTTGAGCGCGTGGGCAGCGCGAGCGAGGGTGACCCCCAGACCCGGCGGCTCTGGGAGGAGGAAG
Seq A exon
GTTTCCATCAGATCGCCCTGAACAAGGTGGCCGTGCTCCTGCTGGCTGGCGGGCAGGGCACCCGCCTGGGCGTGACCTACCCCAAGGGCATGTATCAAGTGGGGCTGCCCAGCCAGAAGACCCTGTACCAACTGCAGGCAGAACGGATTCGGCGGGTGGAGCAGTTGGCCGGCGAGCGCTACGGGACCCGCTGCACTGTGCCCTG
Seq C2 exon
GTACATCATGACCAGTGAGTTCACGCTGGAGCCCACAGCCAAGTTCTTCAAGGAGCATGACTTTTTCCACTTGGATCCCAACAACGTGATCATGTTTGAACAGCGCATGCTGCCTGCTGTGTCCTTCGATGGCAGGGCCATCCTGGAGAGGAAAGACAAGGTCGCCATGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(3.7=13.6)
A:
PF0170413=UDPGP=FE(18.1=100)
C2:
PF0170413=UDPGP=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTCGAGGCCCTGGA
R:
GCATGCGCTGTTCAAACATGA
Band lengths:
292-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]