MmuEX6099485 @ mm10
Exon Skipping
Gene
ENSMUSG00000026956 | Uap1l1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:MGI Symbol;Acc:MGI:2443318]
Coordinates
chr2:25364512-25365682:-
Coord C1 exon
chr2:25365327-25365682
Coord A exon
chr2:25365060-25365085
Coord C2 exon
chr2:25364512-25364687
Length
26 bp
Sequences
Splice sites
3' ss Seq
ACGATGCACCTCTCCTCCAGGTT
3' ss Score
8.73
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GGCCTGGTCTCGTGACATTGGTCAGAAAGTCACGAGTACAGGCTGAGGCGGCCGCTGCAGTTGCAGTATGGACTCGGAGAGGGATGTACGCGCACAGCTGCAGCGTGCGGGCCAGGACCATCTCCTGCGCTTCTATGCCGACCTGGCTCCGGAAGCCCGAGCCGCACTGCTAGCGGAGCTCGCCTCATTGGAGGCCGACGCGCTGCGTGAGCACTGCCAGCGCGCCGCAGCTGCGGGCGCGCTAGCTCCGGGTCCTCTGCCGGACCTGGCTGCGCGCCTGCAGCCCCTGCCCCCAGAACGCGTGGGCAGCGCGATCCGCTGTGACCAAGAGACACGCCTGCGGTGGGAAGAGGAAG
Seq A exon
GTTTCCGACAGATTTCTCTGAACAAG
Seq C2 exon
GTACATCATGACCAGTGAGTTTACCCTGGGACCCACAATCAAGTTCTTCAAGGAGCATGACTTCTTCCACCTGGACCCCACTAACGTAGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026956-'0-2,'0-1,1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.165 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(6.9=27.8)
A:
PF0170413=UDPGP=FE(17.5=100)
C2:
PF0170413=UDPGP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGAGACACGCCTG
R:
CTACGTTAGTGGGGTCCAGGT
Band lengths:
125-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types