RnoEX0101445 @ rn6
Exon Skipping
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212359743-212360556:+
Coord C1 exon
chr1:212359743-212359816
Coord A exon
chr1:212360144-212360335
Coord C2 exon
chr1:212360432-212360556
Length
192 bp
Sequences
Splice sites
3' ss Seq
AGACACACCTCCTTCCCCAGGGT
3' ss Score
5.68
5' ss Seq
GAGGCAAGA
5' ss Score
2.31
Exon sequences
Seq C1 exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
Seq A exon
GGTGCCCGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAACACCACTACCACATGATGCATGGAAATACCTGCTCCTTCTGCAACCGCGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGATTCTCTATTTCAGATCCTGGCCCAGAG
Seq C2 exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGGTTTGATAAGCCCAAGACAAACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272-'1-3,'1-2,2-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGATGTGCAGCGG
R:
CCTCTGTTTGTCTTGGGCTTA
Band lengths:
199-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]