HsaEX0073813 @ hg19
Exon Skipping
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135122894-135123792:+
Coord C1 exon
chr10:135122894-135122967
Coord A exon
chr10:135123280-135123481
Coord C2 exon
chr10:135123668-135123792
Length
202 bp
Sequences
Splice sites
3' ss Seq
GAAGCACGTCTCCTTGGCAGGGT
3' ss Score
3.52
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GATGGGGACGTGCAGCGCCACCTCTACCTCCAGGACGTGATCATGCAGGTGGCCGACGTGCCTGAGAAGCCCAG
Seq A exon
GGTGCCCGCGTTTGCCTGCCAGGTGGCCGGCTGCTGCCAGGTGTTCGATGCCCTGGACGACTACGAGCACCACTACCACACGCTGCACGGAAATGTTTGCTCCTTTTGCAAGCGGGCCTTCCCTTCCGGACACCTGCTGGACGCCCACATCCTGGAGTGGCACGATTCGCTCTTCCAGATCCTGTCTGAGAGGCAGGACATG
Seq C2 exon
TATCAGTGCTTGGTAGAAGGCTGCACAGAGAAGTTCAAGACCAGCAGAGACCGGAAGGATCACATGGTGAGGATGCACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=33.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCGCCACCTCTAC
R:
TCTGCTTTTCTTTGGCTTATCAAACC
Band lengths:
188-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)