GgaEX1065512 @ galGal4
Exon Skipping
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8904416-8905182:+
Coord C1 exon
chr6:8904416-8904489
Coord A exon
chr6:8904774-8904975
Coord C2 exon
chr6:8905058-8905182
Length
202 bp
Sequences
Splice sites
3' ss Seq
CACGCTGTCCTTCCGTACAGGGT
3' ss Score
9.88
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATGGCGACGTGCAGAGGCACCTGTACCTGCGGGAGGCCCTCACGGGCCGCGCCGAGGAGGCGGAGAGGCCCAG
Seq A exon
GGTGTCTGAGTTTTACTGCCACATCTCCGGCTGCTCTCAGGTGTTCGACACGCTGGAGGGCTACGAGCACCACTACAACGCGCTGCACCGGAACGTCTGCTCCTTCTGCAGGCGCTCCTTCCCCTCGGGGCACCTTCTGGACATCCACATCTCCGAGTGGCACGACTCGCTCTTCCAGATCATGGCTGAGAAGCAGAATATG
Seq C2 exon
TACAAGTGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533-'1-6,'1-2,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=33.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCACCTGTACCTG
R:
CTCTTCGCTTTCTTTGGTCTATCGA
Band lengths:
188-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]