DreEX6061299 @ danRer10
Exon Skipping
Gene
ENSDARG00000000760 | znf511
Description
zinc finger protein 511 [Source:ZFIN;Acc:ZDB-GENE-030616-621]
Coordinates
chr13:24535411-24538477:-
Coord C1 exon
chr13:24538404-24538477
Coord A exon
chr13:24537087-24537288
Coord C2 exon
chr13:24535411-24535535
Length
202 bp
Sequences
Splice sites
3' ss Seq
TATCTTAAACCTCTTCCCAGTAT
3' ss Score
4.68
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GATGGCGACATAAACAGACACATGTACCTACAGAATATCGTGACGTCATTTGTGGATGACAAACAGCCTCCAAC
Seq A exon
TATCTCTGAGTTCAGGTGTCACATTGCAGGATGCAAACAATTATTCGACACACTGGAAGGATATGAGCACCACTACAATGCATTACATCGAAACGTGTGCTCCAACTGTAAGCGATCGTTTCCATCAAATCGCCTGCTGGAGATCCACATATTGGAGTGGCATGACTCTCTCTTCCAGATCATGGCGGAGAAACAATGCATG
Seq C2 exon
TATGAGTGCTTGGTTGAAGGATGTGGACTGAAATTCAAAACGAGCAAAGAAAGGAAAGATCATCTAATCAGAACGCATAGCTATCCAGCGGACTTCAGATTTGACAAGTCAAAGAAGATCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000760-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=33.8),PF138941=zf-C2H2_4=PU(6.9=2.9)
C2:
PF138941=zf-C2H2_4=PD(86.2=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGACATAAACAGACACATGT
R:
TTCCGATCTTCTTTGACTTGTCA
Band lengths:
196-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]