MmuEX0053391 @ mm10
Exon Skipping
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:140036820-140037640:+
Coord C1 exon
chr7:140036820-140036893
Coord A exon
chr7:140037220-140037421
Coord C2 exon
chr7:140037516-140037640
Length
202 bp
Sequences
Splice sites
3' ss Seq
AGACACACCTCCTTTCCCAGGGT
3' ss Score
4.93
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
Seq A exon
GGTGCCTGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAGCACCACTACCACATGATGCATGGAAACACCTGCTCCTTCTGCAACCGTGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGACTCTCTGTTTCAGATCCTGGCCCAGAGGCAAGACATG
Seq C2 exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGATTTGATAAGCCCAAGACGAACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-'1-5,'1-4,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.215
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGATGTGCAGCGG
R:
CCTCTGTTCGTCTTGGGCTTA
Band lengths:
199-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types