Special

RnoEX0101557 @ rn6

Exon Skipping

Gene
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81124908-81127059:-
Coord C1 exon
chr1:81127045-81127059
Coord A exon
chr1:81126009-81126135
Coord C2 exon
chr1:81124908-81124976
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTCATATGTGCTTGTTGTAGGAG
3' ss Score
7.32
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATGAGTGCGCCCATG
Seq A exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGATCTTCACTAAGGAGGAGTTCAGGCTGCTGGACTCCACCCAGAGGAAGCTGTACCAAGATGTGATGGTGGAGAATTTTCGGAACCTGCTCTCAGTGG
Seq C2 exon
AGTATCAACTTTTCAAACAAGAGAAACCACAGCTAGAAAGAGAAGAGAAGCCTAGGGAGCAAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416-'14-16,'14-15,18-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.500 A=0.000 C2=0.653
Domain overlap (PFAM):

C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]