RnoEX0101715 @ rn6
Exon Skipping
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41941077-41944061:-
Coord C1 exon
chr19:41943957-41944061
Coord A exon
chr19:41942597-41942763
Coord C2 exon
chr19:41941077-41941930
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTAAGGCTTTGTCTTGCAGCAT
3' ss Score
5.87
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTCACAGAGAACCTAAATTCTGACCCCTTACTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCCCATGTGTACCAG
Seq A exon
CATACTGCAGCGGTGGTGAGTGCCAAGAGTTACATGTGCCCTGTCTGTGGACGGGCCCTTAGCTCCCCAGGGTCTCTGGGTCGCCACCTCCTAATCCACTCAGAAGATCAGCGGTCTAACTGTGCTGTGTGTGGAGCCCGCTTTACTAGCCATGCTACTTTCAACAG
Seq C2 exon
TGAGAAACTTCCTGAAGTACTTAATATGGAATCCCTACCCCCAGTCCATAGCGAGGGTCCCTCCAGTGCTGAAGGACAGGACATTGCCTGTAGTCCTCCAGTCTACCCTGCAGGAATTCTGCTCGTGTGCAACAACTGTGCTGCCTACCGCAAGCTCCTGGAAACACAGACGCCCAGTGTGCGCAAGTGGGCCCTCCGTCGGCAGAACGAACCCTTGGAAGTAAGACTGCAACGACTTGAACGAGAACGCACAGCCAAGAAGAGTCGGCGAGACAATGAGACCCCAGAGGAGCGGGAGGTAAGACGCATGAGGGATCGTGAAGCCAAGCGCCTGCAGCGCATGCAAGAGACAGATGAACAGCGAGCTCGCAGGCTACAGAGAGACCGTGAGGCCATGAGGCTCAAGCGGGCCAATGAAACCCCAGAGAAGCGGCAGGCCCGACTCATTCGAGAGCGAGAGGCTAAGAGGCTCAAGAGGAGACTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.711
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(39.0=65.7)
A:
PF056057=zf-Di19=PD(57.6=60.7),PF116003=CAF-1_p150=PU(3.9=12.5)
C2:
PF116003=CAF-1_p150=PD(95.5=78.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTGCCCATGTGTACCA
R:
ACTTCCAAGGGTTCGTTCTGC
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]