MmuEX0053643 @ mm9
Exon Skipping
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112245654-112248832:+
Coord C1 exon
chr8:112245654-112245758
Coord A exon
chr8:112246787-112246953
Coord C2 exon
chr8:112247864-112248832
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTAAGGCTTTGTTTTACAGCAT
3' ss Score
5.2
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
Seq A exon
CATACTGCAGCAGTGGTGAGTGCCAAGAGTTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCAGGGTCTTTGGGTCGCCACCTCCTAATCCATTCAGAAGATCAGCGGTCCAACTGCGCTGTGTGCGGAGCCCGTTTTACCAGCCACGCCACTTTTAACAG
Seq C2 exon
TGAGAAACTCCCTCAAGTACTTAATATGGAATCCGTACCCCAAGTCCACAGTGAAGGTCCCTCCAGTGCTGAAGGAAAGGACATTGCCTGTAGTCCTCCAGTATACCCTGCTGGAATTCTGCTTGTTTGCAACAACTGTGCTGCTTACCGCAAGCTACTGGAAACACAGACTCCCAGCGTACGCAAGTGGGCCCTTCGGCGACAGAATGAGCCTCTGGAAGTAAGGCTGCAACGACTTGAACGAGAACGCACAGCCAAGAAGAGCCGTCGAGACAATGAGACCCCAGAGGAGAGGGAGGTAAGACGCATGAGGGATCGTGAAGCCAAGCGCCTGCAGCGCATGCAAGAGACAGATGAGCAGCGAGCTCGCAGGCTGCAGCGAGACCGGGAGGCCATGAGGCTGAAGCGGGCCAATGAAACCCCAGAGAAGCGGCAGGCCCGACTCATTCGAGAGCGAGAGGCTAAGAGGCTCAAGAGGAGACTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-'9-12,'9-10,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.697
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(39.0=65.7),PF127732=DZR=PU(26.6=60.0)
A:
PF056057=zf-Di19=PD(57.6=60.7),PF127732=DZR=FE(69.6=100)
C2:
PF127732=DZR=PD(1.3=0.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAACTCTGCCAGTGTCCC
R:
GCTGGGAGTCTGTGTTTCCAG
Band lengths:
253-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: