HsaEX0074411 @ hg19
Exon Skipping
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:28043]
Coordinates
chr16:71893589-71898145:-
Coord C1 exon
chr16:71898041-71898145
Coord A exon
chr16:71895679-71895845
Coord C2 exon
chr16:71893589-71894575
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATCAAGGCTCTGTTTTACAGCAC
3' ss Score
5.12
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAG
Seq A exon
CACACTGCAGCAGTGGTGAGCGCCAAGAGCTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCGGGGTCATTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGATCTAACTGTGCTGTGTGTGGAGCCCGGTTCACCAGCCATGCCACTTTTAACAG
Seq C2 exon
TGAGAAACTTCCTGAAGTACTAAATATGGAATCCCTACCCACAGTCCACAATGAGGGTCCCTCCAGTGCTGAGGGGAAGGATATTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTGTGCAACAACTGTGCTGCCTACCGTAAACTGCTGGAAGCCCAGACTCCCAGTGTACGCAAGTGGGCTCTACGTCGACAGAATGAGCCTTTGGAAGTACGGCTGCAGCGGCTGGAACGAGAGCGCACGGCCAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTGAGGCGCATGAGGGACCGTGAAGCCAAGCGCTTGCAGCGCATGCAGGAGACAGACGAGCAGCGGGCACGCCGGCTGCAGCGGGATCGGGAGGCCATGAGGCTGAAGCGGGCCAATGAAACCCCGGAAAAGCGGCAGGCCCGGCTCATCCGAGAGCGAGAGGCCAAGCGGCTCAAGAGGAGGCTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.693
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(39.0=65.7),PF044239=Rad50_zn_hook=PU(23.5=22.9)
A:
PF056057=zf-Di19=PD(57.6=60.7),PF127732=DZR=FE(68.8=100),PF116003=CAF-1_p150=PU(2.8=8.9)
C2:
PF127732=DZR=PD(1.2=0.5),PF116003=CAF-1_p150=PD(96.6=78.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAACTCTGCCAGTGTCCC
R:
TACACTGGGAGTCTGGGCTTC
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)