Special

BtaEX6081300 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39365609-39368532:+
Coord C1 exon
chr18:39365609-39365713
Coord A exon
chr18:39366653-39366819
Coord C2 exon
chr18:39367562-39368532
Length
167 bp
Sequences
Splice sites
3' ss Seq
GATGAGGCTCTCTTTTCCAGCAC
3' ss Score
6.08
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCACGGAGAATTTGCATTCTGACCCGTTACTTGGACTCTGCCAGTGTCCCCTCTGCCAGCTCGACTGTGGGAGTCGGGAGCAGCTGATTGCTCACGTGTACCAG
Seq A exon
CACACTGCAGCCGTGGTGAGCGCCAAGAGCTACATGTGTCCCGTCTGTGGCCGGGCCCTCAGCTCCCCAGGGTCACTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGGTCGAACTGTGCTGTGTGTGGAGCCCGTTTCACTAGCCATGCCACATTTAACAG
Seq C2 exon
TGAGAAACTCCCTGAAGTCCTTAATGTGGAATCCCTACCACCAGCCCACAGTGAAGGCCCCTCCAGTGCCGAGGGGAAGGACATTGCCTTTACTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTATGCAACAACTGTGCTGCCTACCGGAAGCTGCTGGAAGCCCAGACCCCCAGCGTCCGCAAATGGGCCTTGCGTCGGCAGAATGAGCCTTTGGAAGTCCGGCTGCAGCGACTGGAACGAGAGCGCACAGCCAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTGAGGCGCATGAGGGACCGAGAAGCCAAGCGCCTGCAGCGCATGCAGGAGACGGATGAGCAGCGGGCACGCCGGCTGCAACGAGATCGGGAGGCCATGAGGCTGAAGCGAGCCAACGAGACCCCTGAGAAGCGGCAGGCCCGGCTCATCCGGGAGCGGGAGGCCAAGCGGCTCAAGAGGAGGCTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.076 A=0.024 C2=0.683
Domain overlap (PFAM):

C1:
PF056057=zf-Di19=PU(37.9=62.9),PF127732=DZR=PU(26.6=60.0)
A:
PF056057=zf-Di19=PD(58.6=60.7),PF127732=DZR=FE(69.6=100),PF116003=CAF-1_p150=PU(3.9=12.5)
C2:
PF127732=DZR=PD(1.3=0.5),PF116003=CAF-1_p150=PD(95.5=78.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTGCTCACGTGTACCA
R:
CCGGACTTCCAAAGGCTCATT
Band lengths:
248-415
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]