GgaEX0000800 @ galGal4
Exon Skipping
Gene
ENSGALG00000000817 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr11:19183021-19186003:+
Coord C1 exon
chr11:19183021-19183125
Coord A exon
chr11:19184023-19184189
Coord C2 exon
chr11:19184894-19186003
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGGTTGTTCTGCAGCAC
3' ss Score
8.27
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTTCCTGCGAGCTTGAATGCTGACTCCATGCTGGGACTGTCAAAGTGTCCCCTCTGCCAGCTGGAGTATGAAAGCAGAGAGCAACTCATTGCTCATGTATACCAG
Seq A exon
CACACTGCAGCTGTGGTGAGTGCCAAGAGCTATATGTGTCCTGTATGTGGAAGAGCCCTCAGTTCACCAGGTTCCCTTGGACGACACCTCCTGATCCACTCAGAGGACCAGCTGTCAAACTGTGCAGTGTGTGGAGCACGCTTCACCAGCCACGCCACATTCAACAG
Seq C2 exon
TGAGAAGCTGACAGAGGTGCTCAGTGCAGATCGCCTGCCTATGCCACAGAGCGAGGGCCCCTCCAGCATCAAAGGGAAGGACATTACCTTTCACAGCCCTGTGTATCCTGCAGGCATCCTCCTAGTGTGCAACAACTGTGCTGCTTATCGTAAGCTGCTGGAGGCACAGACACCTGGCATGCGAAAGTGGGCGCTTCGTAGGCAGAACGAGCCCTTGGAAGTGCGTCTGCAGCGTTTGGAGCGGGAGCGCACTGCCAAGAAGAGCCGGCGGGACAATGAGACTCCTGAGGAGCGGGAGGTGAGACGTATGCGGGATCGAGAGGCAAAGCGCCTGCAGCGCATGCAGGAGACAGATGAACAGCGGGCACGGCGGCTACAGCGAGACCGAGAAGCCATGCGAGTGAAACGTGCCAATGAAACTCCAGAGAAACGACAGGCCCGGCTCATCCGGGAGCGTGAGGCCAAGAGGTTGAAGCGGCGCCTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.706
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(27.3=60.0),PF127732=DZR=PU(26.6=60.0)
A:
PF056057=zf-Di19=PD(70.1=96.4),PF127732=DZR=FE(69.6=100)
C2:
PF127732=DZR=PD(1.3=0.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCTGACTCCATGCTGG
R:
GCCTCCAGCAGCTTACGATAA
Band lengths:
257-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]