Special

GgaEX0000800 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr11:21710890-21712827:+
Coord C1 exon
chr11:21710890-21710994
Coord A exon
chr11:21711892-21712058
Coord C2 exon
chr11:21712763-21712827
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGGTTGTTCTGCAGCAC
3' ss Score
8.27
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTTCCTGCGAGCTTGAATGCTGACTCCATGCTGGGACTGTCAAAGTGTCCCCTCTGCCAGCTGGAGTATGAAAGCAGAGAGCAACTCATTGCTCATGTATACCAG
Seq A exon
CACACTGCAGCTGTGGTGAGTGCCAAGAGCTATATGTGTCCTGTATGTGGAAGAGCCCTCAGTTCACCAGGTTCCCTTGGACGACACCTCCTGATCCACTCAGAGGACCAGCTGTCAAACTGTGCAGTGTGTGGAGCACGCTTCACCAGCCACGCCACATTCAACAG
Seq C2 exon
TGAGAAGCTGACAGAGGTGCTCAGTGCAGATCGCCTGCCTATGCCACAGAGCGAGGGCCCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.143 A=0.000 C2=0.706
Domain overlap (PFAM):

C1:
PF056057=zf-Di19=PU(27.3=60.0),PF127732=DZR=PU(26.6=60.0)
A:
PF056057=zf-Di19=PD(70.1=96.4),PF127732=DZR=FE(69.6=100)
C2:
PF127732=DZR=PD(1.3=0.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCGAGCTTGAATGCTG
R:
GCCCTCGCTCTGTGGCATAG
Band lengths:
162-329
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]