RnoEX6004272 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174428699-174434181:-
Coord C1 exon
chr1:174434029-174434181
Coord A exon
chr1:174430092-174430171
Coord C2 exon
chr1:174428699-174428851
Length
80 bp
Sequences
Splice sites
3' ss Seq
TATGTCCTTTATTCCAACAGAAG
3' ss Score
8.62
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTCATCAAATTCTGTGACCACATATGAAACCTGCCAGACCTATGAACGCCCCATCGCCTTCACCTCCAGATCAAAGAAGCTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGTGCCCGAGGATTCCAGGTTCCCTATGTGACATACGATG
Seq A exon
AAGACTACCAGGAGCTCATTGAAGACATAGTCCGAGATGGCAGGCTCTATGCGTCTGAGAACCACCAGGAAATACTGAAG
Seq C2 exon
GATAAGAAACTGATCAAGGCTCTGTTTGATGTCCTGGCACATCCCCAGAACTATTTCAAGTACACAGCCCAGGAGTCCCGGGAGATGTTTCCAAGATCTTTCATCCGATTGCTACGTTCCAAAGTGTCAAGGTTTCTGAGGCCTTACAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'26-30,'26-27,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCCTTCACCTCCAGATCA
R:
ACTCCTGGGCTGTGTACTTGA
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]