GgaEX0008325 @ galGal3
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
NA
Coordinates
chr5:10485137-10487041:+
Coord C1 exon
chr5:10485137-10485289
Coord A exon
chr5:10486303-10486382
Coord C2 exon
chr5:10486889-10487041
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGCACTCTCAATAGAGG
3' ss Score
6.41
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTCTTCCAACTCAGTGACCACGTATGAAACCTGTCAGACCTACGAACGCCCAATAGCTTTCACTTCCAGGTCTAAGAAGCTGTGGATCCAGTTCAAGTCAAATGAAGGGAATAGTGCCAAAGGATTCCAAGTTCCTTACGTAACATATGATG
Seq A exon
AGGATTACCAAGAACTAATAGAAGACATCGTTCGGGATGGTAGACTTTATGCATCTGAAAATCATCAAGAAATACTTAAG
Seq C2 exon
GACAAGAAGCTGATAAAAGCATTGTTTGATGTGTTGGCACATCCGCAGAACTACTTCAAGTACACAGCCCAAGAGTCAAGAGAGATGTTCCCAAGATCCTTCATTCGGCTCCTGCGCTCCAAAGTTTCCAGATTTTTGAGGCCTTACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTACGAACGCCCAATAGC
R:
TAGTTCTGCGGATGTGCCAAC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]