DreEX0064633 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28298036-28300099:-
Coord C1 exon
chr7:28299947-28300099
Coord A exon
chr7:28299785-28299864
Coord C2 exon
chr7:28298036-28299021
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATATAATATGATTCTTTTAGAGG
3' ss Score
3.67
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
CTCTGCCCAATTCAGTGACGACTTACGAGACGTGCCAGACGTACGAGCGGCCCATCGCCTTCACCTCCCGCTCCAAGAAACTCTGGATCCAGTTCCGCTCCAATGAAGGAAACAGTGGAAAAGGCTTTCAAGTGCCTTACGTGACGTATGACG
Seq A exon
AGGACTACCAGGAGCTCATTGAGGACATAGTTAGGGATGGAAGATTATACGCCTCTGAGAATCATCAGGAAATTCTTAAG
Seq C2 exon
GACAAAAAGCTAATGAGGGCCCTGTTTGATGTTCTGGCTCACCCACAGAATTTCTTCAACTACACGGCACAAGAGTCCAGAGAAATGTTTCCCAAATCTTTTATCAGATTCCTCCGCTCCAAAGTTCTAAGATTCCTGCGCCCCTGAATTTTGTCAAATAATCTTTTATGGAATGGGTATTTGGCTCTCCAGCTAAATTTTAAATGACTGGAACAGATATTGTTGAGCGTTCTTGTCTGCATACTCGCAGATTCAAGACAACTTCTGGGACCTGACGAGATGAGAAACTGTCCTGAATTTATGTCATTGGAACTTTTTCTTCTGGAGAAAATGAACTGTTTTTTTTACAGTGAATGATTGCTGACCTTCTAAAAAGAACAGCCACCTTTAAAGAAAAAGATTCTTCTTGTTTCATTCATTTATTGGCCAGAAGTGACTGAGTATCAAAAACATGCTAATTACAGCTGGAAAAAAAGAGCAACTACATTGCTTGTTATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-'26-34,'26-32,27-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTACGAGACGTGCCAGAC
R:
CTGTGGGTGAGCCAGAACATC
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]