GgaEX0008325 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8959806-8961764:+
Coord C1 exon
chr5:8959806-8959958
Coord A exon
chr5:8960972-8961051
Coord C2 exon
chr5:8961558-8961764
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGCACTCTCAATAGAGG
3' ss Score
6.41
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTCTTCCAACTCAGTGACCACGTATGAAACCTGTCAGACCTACGAACGCCCAATAGCTTTCACTTCCAGGTCTAAGAAGCTGTGGATCCAGTTCAAGTCAAATGAAGGGAATAGTGCCAAAGGATTCCAAGTTCCTTACGTAACATATGATG
Seq A exon
AGGATTACCAAGAACTAATAGAAGACATCGTTCGGGATGGTAGACTTTATGCATCTGAAAATCATCAAGAAATACTTAAG
Seq C2 exon
GACAAGAAGCTGATAAAAGCATTGTTTGATGTGTTGGCACATCCGCAGAACTACTTCAAGTACACAGCCCAAGAGTCAAGAGAGATGTTCCCAAGATCCTTCATTCGGCTCCTGCGCTCCAAAGTTTCCAGATTTTTGAGGCCTTACAAATAGCTGGCACTGTCCTTAAAATACTAACCAGCCCTTGGCATGCACAGAGGGGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTACGAACGCCCAATAGC
R:
TAGTTCTGCGGATGTGCCAAC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]