BtaEX6059339 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44153577-44158843:+
Coord C1 exon
chr15:44153577-44153729
Coord A exon
chr15:44157568-44157647
Coord C2 exon
chr15:44158539-44158843
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTTTTTCCAAACAGAGG
3' ss Score
9.64
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTTCATCCAATTCTGTGACAACATATGAAACCTGCCAGACCTACGAACGCCCCATCGCCTTCACCTCCAGATCCAAGAGGCTGTGGATTCAGTTTAAGTCCAATGAGGGGAACAGCGCCAGAGGGTTCCAGGTCCCATACGTGACATACGATG
Seq A exon
AGGACTACCAGGAGCTCATTGAAGACATAGTTCGAGACGGCAGGCTCTATGCATCTGAGAACCATCAGGAAATACTTAAG
Seq C2 exon
GATAAGAAACTGATCAAGGCCCTGTTTGATGTCCTGGCCCACCCCCAGAACTATTTCAAGTACACAGCCCAGGAGTCCCGCGAAATGTTTCCACGATCCTTCATCCGATTGCTCCGTTCCAAAGTGTCCAGGTTTTTGAGGCCTTACAAATAAGACTGCCCACGTGCCACTTGACACAGTGTTCGGCCTGTGGGCTGGCAGGACATGGCCATCTGCTTCTGCAGCCAGCATAGATGGATAACGCTGCCTCTAGTAGCAGTGACTGGTTAGAGTTCAATTTTTATAGATAATACAGGTATTTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573-'33-39,'33-37,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGATCCAAGAGGCTGT
R:
GAAACATTTCGCGGGACTCCT
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]