RnoEX6004669 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190135916-190141812:+
Coord C1 exon
chr1:190135916-190136066
Coord A exon
chr1:190141298-190141396
Coord C2 exon
chr1:190141659-190141812
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCATCTTCTCCTACTTGTAGGTT
3' ss Score
10.67
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GTGTTGGAAGCCACATAGTCATGGTGAAGGAACCTGTCTGTGACGTTGATGAAATCTCAAAACTGATCCATTACTACATACCAACAGCCACCCTGAAGACTAATGTTGGAAATGAGTTATCTTTTATTCTACCCAAAGAATATACACACAA
Seq A exon
GTTTGAAGCTCTCTTGACTGCTCTGGAAGAGAACCAAGAAAACCTTGGCATCTCTAGCTTTGGTATGTCTATCACTACCATGGAAGAAGTCTTCCTTAG
Seq C2 exon
GGTCAGTAAAATGGAAGACTCAAAACCAGATATGGAAGCTACCCAGTCGCCCTCTGCAGGAAGCAAAGGGAACAGGAATAGAGATGTTGAAAGTAGCATGAGAGCAGGCTTTCCCACCCAGAGTGAAGACCAGACCATTGTGTTTAACACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAACAGCCACCCTGAAGA
R:
GCCTGCTCTCATGCTACTTTCA
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]