RnoEX6004674 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190099542-190110086:+
Coord C1 exon
chr1:190099542-190099715
Coord A exon
chr1:190100308-190100486
Coord C2 exon
chr1:190109952-190110086
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTGCTTTGTCTTAGAAA
3' ss Score
8.85
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TCAGTTTTGCTGTGAGCTTGGGAAGTTTCCTTTTTTTCCTCACCTACTTACCAGCTATTACAATGAATCAAAGCTTTGAGCACATGCCACCCAGGCAGAAGCTGATTTGGTCCTTCGACTTCAATGTTGGGATGGCATTTGGATTTAGATTCCTAGTCAATGCAGAAACAAGGA
Seq A exon
AAACTGGAATGAAATGGAATAACATATTCCTACCAACGGATTCAGACAGCCTTTTATTTACCTATGTGCTAGGAATGCTTTTAGTTGATGCTTTCATATATGGCCTTGTGGCCTGGTACATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCAAAGCCGTGGAACTTTTTCTTGATG
Seq C2 exon
CACTCTTACTGGTTTGGAGAATCACGTCAACAAAAACCCGAAATAACCCAATTTTGTAAGAGAGTTGAAAGCAAGTATTTTGAAGTTGAACCAACTGATTTGACAGCAGGCATCCAGATCAAACACCTACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'10-10,'10-8,11-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.2=100)
A:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCACCTACTTACCAGCT
R:
TGGATGCCTGCTGTCAAATCA
Band lengths:
255-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]