RnoEX6005465 @ rn6
Exon Skipping
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212807577-212808309:+
Coord C1 exon
chr1:212807577-212807642
Coord A exon
chr1:212807721-212808035
Coord C2 exon
chr1:212808286-212808309
Length
315 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGATCCCATTTCCAGAGG
3' ss Score
6.77
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAGACAGAAGTTTCTCAAGATATGGAGCAGAGTCCAAACTGCTCATCAACTCGTAGCTGCCCAG
Seq A exon
AGGAAGGTGCACTTCGGGTGTTTGGGGGTGAGAACAGCTGCTCTGGCCGAGTGGAGCTTTGGCATGGAGGTTCCTGGGGCACGGTGTGCGATGACTCCTGGGACCTGGCTGATGCAGAAGTTGTGTGCAGGCAGCTGGGCTGTGGCCCAGCCATAGCTGCCTTGCAGAATGCTGCCTTTGGTCCTGGCTCAGGGCCTATATGGCTGGATGAAGTGGGATGCCGAGGCAGTGAGCTGTCTCTGGGAGCCTGCCAGGCAGAACCATGGGGATATGGAGACTGCTCCCACAAGGAGGATGCGGGTGTGCACTGCCTAG
Seq C2 exon
GTATCCCTGAAACCATGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]