RnoEX6011965 @ rn6
Exon Skipping
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257590564-257593168:+
Coord C1 exon
chr2:257590564-257590744
Coord A exon
chr2:257591662-257591788
Coord C2 exon
chr2:257592999-257593168
Length
127 bp
Sequences
Splice sites
3' ss Seq
CACGTTTTTCCGCCTTACAGGTG
3' ss Score
11.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTTTGTGTATCCACCTTAAAAGATTTCGACATGAACTGATGTTTTCCACCAAAATTAGCACCCATGTTTCCTTCCCCCTGGAAGGCCTGGACCTTCAGCCATTTCTTGCAAAGGATAGCCCAGCTCAGATCGTGACATATGATCTCCTGTCAGTCATCTGTCATCATGGGACTGCAAGTA
Seq A exon
GTGGGCACTACATTGCCTACTGCAGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCACTGAAGTTTCAGAGTCCACCGTACAGAATGCCGAAGCCTACGTCCTTTTCTACAG
Seq C2 exon
GAAGAGCAGTGAAGAGGCACAAAGGGAGAGGCGAAGGATATCCAATTTGTTGAACATAATGGAGCCAAGCCTCCTTCAGTTCTATATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGACTTTCTCTGTATTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-'23-29,'23-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.4=100)
A:
PF0044324=UCH=PD(7.8=95.3)
C2:
PF063377=DUSP=PU(43.8=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTTTCCTTCCCCCTGGA
R:
GCCAGGTTCAGCAAAGGTCTT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]