MmuEX6074768 @ mm9
Exon Skipping
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152042400-152044848:+
Coord C1 exon
chr3:152042400-152042580
Coord A exon
chr3:152043478-152043604
Coord C2 exon
chr3:152044679-152044848
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGCTTTTTCCTGCCTTACAGGTG
3' ss Score
12.59
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATTTTGTGTATCCACCTTAAAAGATTTCGACATGAACTGATGTTTTCCACCAAAATTAGCACCCATGTTTCCTTCCCCCTGGAAGGCCTCGATCTTCAGCCATTTCTTGCAAAGGACAGCCCAGCTCAGATTGTGACATATGATCTCCTGTCAGTCATCTGTCACCATGGGACTGCAAGTA
Seq A exon
GTGGGCACTACATTGCCTACTGCCGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCACTGAAGTTTCAGAGTCCACTGTACAGAATGCCGAGGCCTACGTCCTTTTCTACAG
Seq C2 exon
GAAGAGCAGTGAAGAGGCACAAAAGGAGAGGCGGAGGATATCAAATTTGTTGAACATCATGGAACCTAGCCTCCTTCAGTTCTACATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-'27-25,'27-24,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.6=100)
A:
PF0044324=UCH=PD(7.9=95.3)
C2:
PF063377=DUSP=PU(43.8=55.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTTTCCTTCCCCCTGGA
R:
GCCAGGTTCAGCAAAGGTCTT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: