GgaEX0013157 @ galGal3
Exon Skipping
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19705285-19708115:+
Coord C1 exon
chr8:19705285-19705465
Coord A exon
chr8:19706606-19706732
Coord C2 exon
chr8:19707946-19708115
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTCTAACACTCTAGGTG
3' ss Score
8.28
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATACTGTGCATTCATCTCAAAAGATTTAGACATGAACTTATGTTTTCCACAAAAATTGGAACCCATGTGTCCTTTCCATTGGAAGGCCTTGATCTTCAGCCTTTCCTTGCGAAGGACAGTCCAGCTCAGATAGTGACTTATGATCTCCTATCTGTCATCTGCCATCATGGAACTGCCAGCA
Seq A exon
GTGGACATTATATAGCTTATTGTCGAAACAATTTAAATAATCTGTGGTATGAATTTGATGACCAAAGTGTCACAGAGGTTTCAGAATCCACAGTGCAAAATGCGGAAGCCTATGTTCTCTTCTACAG
Seq C2 exon
GAAGAGTAATGAAGAAGCTCAAAGAGAGAGGCGGAGAATATCAAGTCTACTGAATATGATGGAACCAAGTCTTCTGCAGTTCTATGTTTCAAGACAGTGGTTAAATAAATTCAAGACTTTTGCAGAGCCAGGACCAATTTCAAATAATGACTTCCTTTGTATGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'24-26,'24-24,25-26
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.3=100)
A:
PF0044324=UCH=PD(7.7=95.3)
C2:
PF063377=DUSP=PU(44.6=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCCTTGATCTTCAGCC
R:
GAAATTGGTCCTGGCTCTGCA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]