DreEX0083814 @ danRer10
Exon Skipping
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8954224-8960903:+
Coord C1 exon
chr2:8954224-8954404
Coord A exon
chr2:8957869-8957995
Coord C2 exon
chr2:8960734-8960903
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTATTTTGTTTAAGGTG
3' ss Score
10.19
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ATTTTGTGCATTCATCTCAAGCGCTTCAGACATGAACTGATGTTCTCCACCAAAATCGGCACTCATGTGTCATTCCCTCTGGAAGGCCTTGAAATGCAGCCCTTTTTGGCCAAGGACAGCTCTGCCCTGACCACCACCTATGACCTGCTTTCAGTCATCTGTCACCATGGCACTGCCAGCA
Seq A exon
GTGGCCACTATATTGCCTATTGTCGGAATGAGCTGAACCAACTGTGGTACGAGTTTGACGACCAGAGCGTTACTGAAGTGTCAGAGTCCTGTGTTCAAAACGCTGAGGCATATGTGCTCTTTTACAA
Seq C2 exon
GAAGAGTAATGATGAGACTCAGAAGGAAAGGAGGAAGGTGACCAGTCTGTTCAACATGATGGAGCCAAGCCTCCTGCAGTTCTACGTCTCCCGCCAGTGGCTGAACAAGTTCAAAACTTTTGCTGAGCCAGGACCCATTTCCAACCATGACTTCCTGTGTGCCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163-'21-21,'21-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.7=100)
A:
PF0044324=UCH=PD(8.0=95.3),PF063377=DUSP=PU(13.3=34.9)
C2:
PF063377=DUSP=FE(50.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCATTCATCTCAAGCGCT
R:
AGGCTTGGCTCCATCATGTTG
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]