GgaEX0013157 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17903905-17906735:+
Coord C1 exon
chr8:17903905-17904085
Coord A exon
chr8:17905226-17905352
Coord C2 exon
chr8:17906566-17906735
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTCTAACACTCTAGGTG
3' ss Score
8.28
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATACTGTGCATTCATCTCAAAAGATTTAGACATGAACTTATGTTTTCCACAAAAATTGGAACCCATGTGTCCTTTCCATTGGAAGGCCTTGATCTTCAGCCTTTCCTTGCGAAGGACAGTCCAGCTCAGATAGTGACTTATGATCTCCTATCTGTCATCTGCCATCATGGAACTGCCAGCA
Seq A exon
GTGGACATTATATAGCTTATTGTCGAAACAATTTAAATAATCTGTGGTATGAATTTGATGACCAAAGTGTCACAGAGGTTTCAGAATCCACAGTGCAAAATGCGGAAGCCTATGTTCTCTTCTACAG
Seq C2 exon
GAAGAGTAATGAAGAAGCTCAAAGAGAGAGGCGGAGAATATCAAGTCTACTGAATATGATGGAACCAAGTCTTCTGCAGTTCTATGTTTCAAGACAGTGGTTAAATAAATTCAAGACTTTTGCAGAGCCAGGACCAATTTCAAATAATGACTTCCTTTGTATGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.5=100)
A:
PF0044324=UCH=PD(7.9=95.3)
C2:
PF063377=DUSP=PU(44.6=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCCTTGATCTTCAGCC
R:
GAAATTGGTCCTGGCTCTGCA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]