RnoEX6012483 @ rn6
Exon Skipping
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21602100-21610310:-
Coord C1 exon
chr4:21610047-21610310
Coord A exon
chr4:21609133-21609306
Coord C2 exon
chr4:21602100-21602286
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTTTTTCAATGAAGGAT
3' ss Score
7.32
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACAGACGTCTCATCAATGATGTGGTGAAGATTTATTCAATCTCAGCCACGAATGCAGTTGATGGGGTAGCAGCATCATGTCGGGCCTGTGCCCTGGGTTCTGAGCAGTCGGGATCATCATGTGTGCCCTGCCCCCCAGGCCACTACATCGAGAAAGAAACCAATCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAGGCTTGCATTCCATGTGGGCCTGGGAGTAAAAGCACCCAG
Seq A exon
GATCACTCGCTTTGCTACAGTGACTGCTTTTTCTACCATGAAAAAGAAAACCAGAGTCTGCACTATGACTTCCGCAACCTCAGCAGTGTGGGCTCTCTAATGAATGGCCCCAGCTTCACCTCCAAGGGAACCAAATACTTCCATTTCTTCAATATCAGTTTATGCGGGCATGAG
Seq C2 exon
GGGAGAAAGATGGCTCTCTGCACCAACAATATTTCAGATTTTACAGTAAAGGAGATGGTGACAGGGTCAGATGATTTGAATTTGGTTGGAGCATTTGTGTGCCAGTCAACTATTATTCCTTCAGAAAGTAAGGGCTTCCGGGCAGCCCTGTCATCCCAGTCGATCATTCTGGCAGATACATTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-'13-27,'13-25,24-27=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
PF076998=GCC2_GCC3=PD(15.7=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTCAGTGGTAGAGCGCTT
R:
TTGTTGGTGCAGAGAGCCATC
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]