GgaEX0009422 @ galGal4
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7500866-7503263:+
Coord C1 exon
chr1:7500866-7501129
Coord A exon
chr1:7501895-7502068
Coord C2 exon
chr1:7503074-7503263
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCTCCATCTCTGAAGGAC
3' ss Score
8.16
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCAGGCAGTTCATCAATGATGTGGCAAAGATCTACTCCATCACAGTGACTAACGCGGTGGATGGAGTCGCCTCCTCTTGCCGGGCCTGCGCTCTGGGCTCTGAGCAGTCCGGCTCATCCTGTGTGCCCTGCCCAGTGGGACACTACATTGAGAAGGAGACCAGCCAGTGCAAGGAGTGTCCAGCCAACACCTTCCTGTCCATCCACCAGGTCTATGGCAAGGAGGCCTGCATTCCATGTGGGCCTGGCAGCAAGAGCACCAAG
Seq A exon
GACCACTCCGCCTGCTTCAGTGACTGCTTGGTGTCATACATCAAGGATAACCAGACCCTGAGTTATGATTTTAGCAACCTCAGCCAGGTGGGCTCCTTAATGAGTGGGCCGAGCTTCACTTCCCGTGGGACCAAGTTCTTCCACTTCTTTAACATCAGCCTGTGTGGAAATGAG
Seq C2 exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCGGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
PF076998=GCC2_GCC3=PD(15.7=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAAGGAGACCAGCCAGT
R:
CGATGGGATGATGGTGGACTG
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]