MmuEX6015878 @ mm9
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9440725-9445553:+
Coord C1 exon
chr5:9440725-9440983
Coord A exon
chr5:9441634-9441807
Coord C2 exon
chr5:9445364-9445553
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCTTTAAATGAAGGAC
3' ss Score
6.44
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCTGGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCCTGGAAGTAAAAGCACCCAG
Seq A exon
GACCACTCGCTTTGCTATAGCGACTGCTTTTTCTACCATGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCTCAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAG
Seq C2 exon
GGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PD(15.7=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAACCAGTGCAAGGAGTG
R:
CCCGGAAGCCCTTACTTTCAG
Band lengths:
251-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: