DreEX6001145 @ danRer10
Exon Skipping
Gene
ENSDARG00000004386 | si:dkey-153k10.9
Description
si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
Coordinates
chr4:9681477-9682514:+
Coord C1 exon
chr4:9681477-9681740
Coord A exon
chr4:9682023-9682196
Coord C2 exon
chr4:9682325-9682514
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGTGTGTATCCAGGAG
3' ss Score
9.29
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTGCGTCAGTATGTGAATGACATCGCAAAGATCTACTCGATCACGGTGACTAATGCGATGGATGGTTCAGCGTCTGGTTGCCATGCTTGTGCAATGATGAGTCAGCAGGACGGCTCTTCCTGCGTCCCCTGTCCTGCTGGACACTTCATCAACAAAGACACCAACCAGTGCCAGGAGTGCCCGCCAAACACATTCCTCTACGGGCATCACATTTACGGGCACGAGGCCTGTCAGCCATGTGGTCCTGGAAGCAAGAGCAATAAG
Seq A exon
GAGCACTCTGTGTGTTTTAATGACTGCACCTTCTCACACATGGATCAGAACCGAACGTTGAACTATGACTTGAGTGCCTTAAGTTCAGTTGGATCAATCATGAATGGGCCTAGTTTCACCTCCAAGGGAACTAAATATTACCACCAATTTAATATCAGTCTGTGTGGGGCTGAG
Seq C2 exon
GGGAGGAAGGTGGCAGTGTGCACTGATAACGTCACAGATATGTCCAGCAAGGACCTTCAGAATGAATCCGCTGACCTCAACAATTTTGTCGAGACTTTTGTGTGCCAATCGACCATCATCCCTGCAGATGGACGCGGCTTCAGATCAGCACTGTCATCTCAGTCCATCAGCCTGGCTGACACTTTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004386-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=56.8),PF075629=NCD3G=WD(100=47.7),PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
PF076998=GCC2_GCC3=PD(15.7=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACACCAACCAGTGCCAG
R:
TCCATCTGCAGGGATGATGGT
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]