GgaEX0009422 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8105249-8107744:+
Coord C1 exon
chr1:8105249-8105512
Coord A exon
chr1:8106376-8106549
Coord C2 exon
chr1:8107555-8107744
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCTCCATCTCTGAAGGAC
3' ss Score
8.16
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCAGGCAGTTCATCAATGATGTGGCAAAGATCTACTCCATCACAGTGACTAACGCGGTGGATGGAGTCGCCTCCTCTTGCCGGGCCTGCGCTCTGGGCTCTGAGCAGTCCGGCTCATCCTGTGTGCCCTGCCCAGTGGGACACTACATTGAGAAGGAGACCAGCCAGTGCAAGGAGTGTCCAGCCAACACCTTCCTGTCCATCCACCAGGTCTATGGCAAGGAGGCCTGCATTCCATGTGGGCCTGGCAGCAAGAGCACCAAG
Seq A exon
GACCACTCCGCCTGCTTCAGTGACTGCTTGGTGTCATACATCAAGGATAACCAGACCCTGAGTTATGATTTTAGCAACCTCAGCCAGGTGGGCTCCTTAATGAGTGGGCCGAGCTTCACTTCCCGTGGGACCAAGTTCTTCCACTTCTTTAACATCAGCCTGTGTGGAAATGAG
Seq C2 exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCAGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
PF076998=GCC2_GCC3=PD(15.7=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAAGGAGACCAGCCAGT
R:
CCCTTGCTGTCTGATGGGATG
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event