RnoEX6013488 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78104949-78106333:+
Coord C1 exon
chr4:78104949-78105119
Coord A exon
chr4:78105204-78105368
Coord C2 exon
chr4:78106154-78106333
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGCTGTGCCCTGCAGTCG
3' ss Score
7.31
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
CAAGTCCTGAGCCCTTCACTGTGCCTACTACTGCCCTCCCTGGGTTGCCAGCCTCAAGGGCCCTCTGTTCCCCAAGTCAGCTGAGCTGTGGCAGTGGGGAGTGCCTACCCCTTGAGCATCGATGTGACCTTCAGGTGAACTGCCAGGATGGCTCTGATGAGGATGACTGTG
Seq A exon
TCGACTGTGTGTTGGCACCTTGGTCTGGCTGGAGTGACTGCAGCCGCAGCTGTGGCCTGGGCCTCATCTTCCAGCACCGAGAGCTGCTGAGACCTCCCCTGCCTGGAGGCAGCTGTCTGTTGGACCAGCTCCGTAGCCAGCCCTGCTTTGTGCAAGCCTGCCCAG
Seq C2 exon
TGGCTGGGGCATGGGCGAAATGGGGGCCCTGGGAGCCCTGCAGTGTCTCCTGTGGAGGTGGCCACCAGAGTCGCCAGAGGAGCTGTGTGGACCCTCCACCCAAGAATGGTGGGGCCCCATGTCCTGGGCCTTCTCATGAGAAGGTGCTCTGCAACTTGCAGCTCTGCCCGGGTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'52-55,'52-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=63.8)
A:
PF0009014=TSP_1=WD(100=87.5)
C2:
PF0009014=TSP_1=WD(100=83.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTCCCCAAGTCAGCTGA
R:
TCATGAGAAGGCCCAGGACAT
Band lengths:
247-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]