BtaEX6029404 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113462945-113464260:+
Coord C1 exon
chr4:113462945-113463124
Coord A exon
chr4:113463224-113463388
Coord C2 exon
chr4:113464081-113464260
Length
165 bp
Sequences
Splice sites
3' ss Seq
CGGCCGGCCCGTCCCTGCAGTGG
3' ss Score
8.1
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CATGGGCAGCGGGCACCGTGCCCTTCACCGTGCCCACCACCACCCTGCCGGGGTTGCCGGCCTCCAGGGACCTCTGCTCCCCGAGCCAGCTGACCTGCGGCAGTGGGGAGTGTCTGCCTGCCGAGCGGCGCTGCGACCTGCAGCTGGACTGCCAGGACGGCTCGGACGAGAATGGCTGTG
Seq A exon
TGGACTGTGGCCTGGCGCCCTGGTCTGGCTGGAGCAGCTGCAGCCGTAGCTGTGGCCTGGGCCTCGCCTTCCAGCGCCGGGAGCTACTGCGGCCGCCCCTGCCCGGGGGCAGCTGCCCACCGGACCGGCTCCGCAGCCAGCCCTGCTTCGTGCAGGCCTGCCCAG
Seq C2 exon
TGGCTGGGGCGTGGGCTGAGTGGGAGGCCTGGGGGCCCTGCAGCGTCTCGTGTGGGGGCGGCCATCGGAGTCGTCGGAGAAGCTGTATGGACCCCCCGCCCAAGAATGGTGGTGCCCCCTGCCCCGGGCCCCCCCAAGAGAGGGCACCCTGTGGCCTGCAGCCCTGTGCAGGTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'60-59,'60-58,61-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.054 C2=0.311
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(92.5=60.7)
A:
PF0005713=Ldl_recept_a=PD(5.0=3.6),PF0009014=TSP_1=WD(100=87.5)
C2:
PF0009014=TSP_1=WD(100=83.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCGTGCCCACCAC
R:
TACAGCTTCTCCGACGACTCC
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]