GgaEX6017991 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:423503-425342:+
Coord C1 exon
chr2:423503-423673
Coord A exon
chr2:424525-424689
Coord C2 exon
chr2:425163-425342
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCCATCCCTTCCAGCTG
3' ss Score
9.83
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAGCCCTCCCCACCTCCGGCAGCTCCCCGTCACCCCTGGCCTGGCCCAGCGGTCCCTCACCCACCTGCTCCCCCAAGCAGTTCTCCTGCGGCACGGGTGAGTGCCTGGCCCTGGAGAAGCGCTGCGACCTGAGCCGTGACTGTGCTGATGGCTCCGATGAGAGCAGCTGTG
Seq A exon
CTGACTGCATCCTGTCCCCATGGGGTGGCTGGAGCCAGTGCAGCCACTCCTGCGGGCTGGGGGTGACGTCTCGCCAACGGGTCCTGCTGCGGGGTGCCCTGCCTGGGGGCACCTGCCACACCCCCCGCCTTGATACCCGCGCCTGCTTCCTGCGTGCCTGCCCAG
Seq C2 exon
TGCCTGGCGCCTGGGCAGCCTGGGGTGTGTGGTCCTCCTGTGATGCTGAGTGCGGGGGGGGCATGCGGAGCCGCACCCGGAGCTGCACCGACCCCCCACCCAAGAACGGTGGCCAGCCCTGTGCCGGGGAGGCCCTGCAGAGCCAGCCCTGCAACCTGCAGCCCTGTGGGGACACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'50-50,'50-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(92.5=63.8)
A:
PF0005713=Ldl_recept_a=PD(5.0=3.6),PF0009014=TSP_1=WD(100=87.5)
C2:
PF0009014=TSP_1=WD(100=83.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCAAGCAGTTCTCCTG
R:
GTTGCAGGGCTGGCTCTG
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]