MmuEX6004228 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48472394-48473561:+
Coord C1 exon
chr6:48472394-48472564
Coord A exon
chr6:48472649-48472813
Coord C2 exon
chr6:48473382-48473561
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGCTGTCCCCTGCAGTAG
3' ss Score
7.83
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
CAAGTGCTGAGCCCTTCACTGTGCCTACTACTGCCCTCCCTGGGTTACCAGCCTCAAAGGCCCTCTGCTCCCCAAGTCAGCTGAGATGTGGCAGTGGGGAGTGTCTACCTTTTGAGCATCGCTGTGACCTTCAGGTGAACTGCCAGGATGGCTCTGATGAAGACAACTGTG
Seq A exon
TAGACTGTGTGTTGGCACCTTGGTCTGGCTGGAGTGACTGCAGCCGCAGCTGTGGCCTGGGCCTCATCTTCCAGCACCGAGAGCTGCTAAGACTTCCCCTGCCTGGAGGCAGCTGTCTGTTGGACCAGTTCCGTAGCCAGTCCTGCTTTGTGCAAGCCTGCCCAG
Seq C2 exon
TGGCCGGGGCATGGGCAGAATGGGGGCCCTGGACGGCCTGCAGTGTCTCCTGTGGAGGTGGCCACCAGAGTCGCCAGAGGAGCTGTGTGGACCCTCCTCCCAAGAATGGTGGTGCCCCATGCCCTGGGCCTTCCCATGAGAAGGCACCCTGCAACTTGCAGCTCTGCCCAGGTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'46-65,'46-54,57-65=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=63.8)
A:
PF0009014=TSP_1=WD(100=87.5)
C2:
PF0009014=TSP_1=WD(100=83.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAAGTCAGCTGAGATGT
R:
AGGGTGCCTTCTCATGGGAAG
Band lengths:
253-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types