HsaEX0061883 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149801741-149803126:+
Coord C1 exon
chr7:149801741-149801955
Coord A exon
chr7:149802040-149802204
Coord C2 exon
chr7:149802947-149803126
Length
165 bp
Sequences
Splice sites
3' ss Seq
CGGCCCCCATGCCCCTGCAGTGG
3' ss Score
7.26
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAATCTACTTATGTGGCTCCCTTCTCTCCCTGCCTTGTGGGCAGCGAGCACTGTGCCCTTCATGATGCCTACCATGGCCCTGCCTGGGCTTCCAGCCTCAAGGGCCCTCTGTTCCCCGAGCCAGCTGAGCTGTGGCAGCGGGGAGTGTCTGTCTGCTGAGCGGCGCTGTGACCTGCGGCCTGACTGCCAGGATGGCTCGGACGAGGATGGCTGTG
Seq A exon
TGGACTGCGTGCTGGCCCCCTGGTCTGTCTGGAGCAGCTGCAGCCGCAGCTGTGGCCTGGGCCTCACCTTCCAGCGCCAGGAGCTGCTGCGGCCTCCTCTGCCAGGGGGCAGCTGCCCGCGTGACCGGTTCCGAAGCCAGTCCTGCTTTGTGCAGGCCTGCCCAG
Seq C2 exon
TGGCTGGGGCATGGGCCATGTGGGAGGCCTGGGGACCCTGCAGCGTCTCCTGCGGGGGTGGCCATCAGAGTCGCCAGAGAAGCTGTGTGGACCCCCCACCCAAGAATGGCGGTGCCCCCTGCCCCGGGGCCTCCCAAGAGAGGGCACCCTGCGGCTTGCAGCCCTGCTCAGGTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'65-75,'65-74,66-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGTGCCCTTCATGATG
R:
AGCTTCTCTGGCGACTCTGAT
Band lengths:
253-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development