RnoEX6013491 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78100267-78101646:+
Coord C1 exon
chr4:78100267-78100420
Coord A exon
chr4:78100848-78100920
Coord C2 exon
chr4:78101585-78101646
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGGTGGTTTTTCTTCCTAGAGT
3' ss Score
7.6
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGCCCCCATTGGCACCCCTATGTCCAGGGACCAGGCACCGCTGTGCCAATGGTGACTGTGCCCTAAAGGGTGGGCCATGTGATGGTGCTGTGGACTGTGAGGATGGCTCAGATGAGGAGGGCTGTGGGCCCCTTCGTGCAAGCACTGCTAGCAG
Seq A exon
AGTCCATTCCACAGCCAGGACCCCAGCCCTCTCCCCCACTCAGCCTGGAAAGTTTCCGTTCCATCCCAGGGAG
Seq C2 exon
GGTCTGGCGGACATGGAGCACCAGCAACCCAAGCAGGAATCACCCATGCCTAGTGCAGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=71.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTCCAGGGACCAGGCA
R:
TGATTCCTGCTTGGGTTGCTG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]