MmuEX0045068 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48417836-48419213:+
Coord C1 exon
chr6:48417836-48417989
Coord A exon
chr6:48418456-48418519
Coord C2 exon
chr6:48419156-48419213
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGGTGGTTTTTCTTTCTAGAGT
3' ss Score
8.3
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGTCCCCGTTGGCACCCCTATGTCCAGGGAGCAGGCACCGCTGTGCCAGTGGTGAATGTGCCCCAAAGGGTGGTCCATGTGATGGTGCTGTGGACTGTGACGATGGCTCTGATGAGGAGGGATGTGGGTCCCTTCATGCAAGCACTACCAGCAG
Seq A exon
AGTCCATCCCATGACCAGGACCCCAGCCCTCTCCCCGACTCAGCCTGGAAAGTTTCCCAGGGAG
Seq C2 exon
GGTCTGCCAGACACAGAGCCCCAGCAGCCCAAGCAGGAATCATCCTTGCCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_MULTIEX3-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=71.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGATGGTGCTGTGGACTG
R:
GCACCAGGCAAGGATGATTCC
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: