HsaEX6011200 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149796596-149798125:+
Coord C1 exon
chr7:149796596-149796746
Coord A exon
chr7:149797272-149797344
Coord C2 exon
chr7:149798068-149798125
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGGCTATTTTTCTCCCCAGATT
3' ss Score
9.32
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCCCCACCGGCACCTCTGTGCCCAGGGGTTGGACTCCGCTGTGCCAGTGGTGAGTGTGTCCTGAGAGGGGGCCCTTGTGACGGTGTTCTGGACTGCGAGGATGGCTCGGATGAGGAGGGCTGTGTGTTGCTGCCTGAGGGCACTGGCAG
Seq A exon
ATTCCATTCCACAGCCAAGACCCTGGCCCTCTCCTCTGCCCAGCCGGGGCAGCTGCTGCACTGGCCCAGGGAG
Seq C2 exon
GGCCTGGCAGAGACTGAGCACTGGCCCCCTGGGCAGGAATCCCCCACGTCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'56-63,'56-62,57-63=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGACTCCGCTGTGCC
R:
GGGACGTGGGGGATTCCTG
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains