BtaEX6029409 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113458944-113460403:+
Coord C1 exon
chr4:113458944-113459082
Coord A exon
chr4:113459571-113459643
Coord C2 exon
chr4:113460340-113460403
Length
73 bp
Sequences
Splice sites
3' ss Seq
CGTGGTTATTTTTCTCTCAGAAT
3' ss Score
8.14
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CGCCCCTGTGCCTAGGGGTTGGGCACCGTTGTGTCAGTGGCGAGTGTGCCCCCAGGGGGGCCCCGTGTGACGGTGTGGAGGACTGCAAGGATGGCTCCGATGAGGAGGGCTGCGTAACGCCACCCGCAGGCGCTGGCAG
Seq A exon
AATCGAGTCCACAGCCTGGAGCTCCGCGCCCTCCTCCGCCCAGCCTGGACAGCTGCCCCCTCAGCCCAGCGAG
Seq C2 exon
GGTCTGGCAGAAGCAGAAGCTGACCACTGGCATCCTGGGCGGGGGTCACCCGTGCCCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'54-54,'54-53,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=78.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCCTAGGGGTTGGG
R:
GATGCCAGTGGTCAGCTTCTG
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]