RnoEX6013494 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78099088-78100187:+
Coord C1 exon
chr4:78099088-78099282
Coord A exon
chr4:78099372-78099499
Coord C2 exon
chr4:78100028-78100187
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCTCCCCCAACCCCCACCAGGCA
3' ss Score
5.27
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGCCTGCTATTCTCCCCTTGGCCTGGCTGGACTGCCCACGTGGGCACCATCCCAGCCCCTGGAGCATAGCACCAGGGCTGCCCCAGTGGAAGCTCCCACGGCAGGGCCTGGCCCCAGAGAGGATGCTTATGCTGAGTGGCACACCCAGCCACTCTATCTGCAGCTGGACCTGCTTTGGCCTCGGAACCTAACTG
Seq A exon
GCATCATGGTGCAGAGGGCTGGCTCCTCTGCTGCGTATATCTCCAACTTGTCGCTCCAGTTCAGCAGTGACGGTCTACAGTGGCACAGCGTTCTCAACTCTCTGTCTAGTACCCTGCCTCCACCCAAG
Seq C2 exon
CCTTCTCCGGAGAGCTCGAACCACATGGTCCCTGAGGTATGGACATTCGACCAGATGGTACAGGCAAGGTACATCAGGGTGTGGCCACATGGCAGCCACCTCAGAGACAACAACCAGCAGGATATCTTCCTGTGGGTGGAGCTACTGGGCTGTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.163 C2=0.204
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(26.6=50.0)
A:
PF0075420=F5_F8_type_C=FE(33.9=100)
C2:
PF0075420=F5_F8_type_C=PD(37.9=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCAGAGAGGATGCTTAT
R:
GCTTACAGCCCAGTAGCTCCA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]