BtaEX6029412 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113457464-113458845:+
Coord C1 exon
chr4:113457464-113457673
Coord A exon
chr4:113457781-113457890
Coord C2 exon
chr4:113458677-113458845
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTGCCCCTCCCCCAGGCA
3' ss Score
9.13
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATCCTTGCTATTCACCCCTGGGCCTGGCCCGACTCCCCGAAGGGAGCCTGCCTGCTTCGTCCCAGCAGCTGGAGCACCCCGCCTGGGCTGCCATCCTGAGGCCTGCCCCGGGGGCGCCAGGCTGGAGCCCCGTGGAGCACGCTGATACTCAGGGGCACACCCCGCCTCCCTACCTGCAGCTCGACCTGCTCCAGCCCAGGAACCTCACTG
Seq A exon
GCATCATAGTGCAGGGGGCTGGGTCCTCAGACTGGCTCCAGGTCAGCAGTGATGGTCTACACTGGCACAGCTATCGTGACATCCAGCCTGGCACTCAGCCTGCACCCCAG
Seq C2 exon
CTTTTCCCCAAGAACTGGAATGGCCCCTCCACAGTGTGGATGTTTGCCCGGATGGTGCAGGCGCGGCACGTCCGGGTGTGGCCTTCTGATGGGCACCACCAGGCTGCCCCCAGCAGTGATGCCAACCTGGACGGCCCCCTGCGGGTGGAGCTGCTGGGCTGTGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'51-51,'51-50,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.324 C2=0.439
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(38.7=77.5)
A:
PF0075420=F5_F8_type_C=FE(25.4=100)
C2:
PF0075420=F5_F8_type_C=PD(34.5=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTATTCACCCCTGGGC
R:
CGGGCAAACATCCACACTGT
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]